University of Texas Southwestern Medical Center

Research Output 1953 2019

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2019

Exome sequencing of drug-resistant clones for target identification

Han, T. & Nijhawan, D., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 175-187 13 p. (Methods in Molecular Biology; vol. 1888).

Research output: Chapter in Book/Report/Conference proceedingChapter

Exome
Clone Cells
Mutation
Pharmaceutical Preparations
Colorectal Neoplasms

Ex Vivo Transposon-Mediated Genetic Screens for Cancer Gene Discovery

O'Donnell-Mendell, K. A., Guo, Y., Suresh, S., Updegraff, B. L. & Zhou, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 145-157 13 p. (Methods in Molecular Biology; vol. 1907).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neoplasm Genes
Genetic Association Studies
Mutagenesis
Intercellular Signaling Peptides and Proteins
Phenotype

Identification of Protein Homologs and Domain Boundaries by Iterative Sequence Alignment

Schaeffer, D. & Grishin, N. V., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 277-286 10 p. (Methods in Molecular Biology; vol. 1851).

Research output: Chapter in Book/Report/Conference proceedingChapter

Sequence Alignment
Information Storage and Retrieval
Libraries
Software
Databases

Isotopic Labeling of Eukaryotic Membrane Proteins for NMR Studies of Interactions and Dynamics

Dikiy, I., Clark, L. D., Gardner, K. H. & Rosenbaum, D. M., Jan 1 2019, Methods in Enzymology. Wand, A. J. (ed.). Academic Press Inc., p. 37-65 29 p. (Methods in Enzymology; vol. 614).

Research output: Chapter in Book/Report/Conference proceedingChapter

Labeling
Membrane Proteins
Nuclear magnetic resonance
G-Protein-Coupled Receptors
Adenosine A2A Receptors

Mouse models to study natural killer cell-mediated immunosurveillance and metastatic latency

Nair, V. R. & Malladi, S., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 141-150 10 p. (Methods in Molecular Biology; vol. 1884).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunologic Monitoring
Natural Killer Cells
Neoplasms
Cell Line
Luciferases

Structural and Biochemical Analyses of the Core Components of the Hippo Pathway

Ni, L. & Luo, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 239-256 18 p. (Methods in Molecular Biology; vol. 1893).

Research output: Chapter in Book/Report/Conference proceedingChapter

Long-Acting Thyroid Stimulator
Phosphotransferases
Allosteric Regulation
Organ Size
Crystallization
2018

Adolescent urology: Sexually transmitted infections

Schlomer, B. J., Jan 1 2018, Handbook of Pediatric Urology, Third Edition. Wolters Kluwer Health, p. 277-282 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adolescent urology: Acute scrotum, varicoceles, and delayed puberty

Schlomer, B. J., Jan 1 2018, Handbook of Pediatric Urology, Third Edition. Wolters Kluwer Health, p. 159-166 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citations

A role for retrotransposons in chromothripsis

Hancks, D. C., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 169-181 13 p. (Methods in Molecular Biology; vol. 1769).

Research output: Chapter in Book/Report/Conference proceedingChapter

Retroelements
Double-Stranded DNA Breaks
Chromosomes
Genome
Sequence Inversion

Atrial Septal Defect

Shafer, K. & Brickner, M. E., Jan 8 2018, Essential Echocardiography: A Companion to Braunwald's Heart Disease. Elsevier, p. 429-434.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Atrial Heart Septal Defects

Autism BrainNet: A network of postmortem brain banks established to facilitate autism research

Amaral, D. G., Anderson, M. P., Ansorge, O., Chance, S., Hare, C., Hof, P. R., Miller, M., Nagakura, I., Pickett, J., Schumann, C. & Tamminga, C., Jan 1 2018, Handbook of Clinical Neurology. Elsevier B.V., p. 31-39 9 p. (Handbook of Clinical Neurology; vol. 150).

Research output: Chapter in Book/Report/Conference proceedingChapter

Autistic Disorder
Brain
Research
Research Personnel
Tissue Banks

Benign Neoplasms of the Larynx, Hypopharynx, and Trachea

Bishop, J. A., Feb 1 2018, Head and Neck Pathology: A Volume in the Series: Foundations in Diagnostic Pathology. Elsevier, p. 122-137.e2

Research output: Chapter in Book/Report/Conference proceedingChapter

Hypopharynx
Larynx
Trachea
Neoplasms

Cardiovascular manifestations in duchenne/becker muscular dystrophy and other primary myopathies

Stoller, D. A. & Mammen, P. P. A., Jan 17 2018, Cardiovascular Genetics and Genomics: Principles and Clinical Practice. Springer International Publishing, p. 523-543 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Duchenne Muscular Dystrophy
Muscular Diseases
Muscular Dystrophies
Neuromuscular Diseases
Cardiomyopathies

Challenges of using 3 T MR systems and whole-body MRI for lung imaging

Ohno, Y., Takahashi, M., Koyama, H. & Yoshikawa, T., Jan 1 2018, Medical Radiology. 9783319426167 ed. Springer Verlag, p. 479-505 27 p. (Medical Radiology; no. 9783319426167).

Research output: Chapter in Book/Report/Conference proceedingChapter

Magnetic Resonance Spectroscopy
Magnetic Resonance Imaging
Lung
Lung Diseases
Mediastinal Diseases

Chapter 1: General Synthetic and Physical Methods

Do, Q. N., Ratnakar, J. S., Kovács, Z., Tircsó, G., Krisztián Kálmán, F., Baranyai, Z., Brücher, E. & Tóth, I., Jan 1 2018, New Developments in NMR. 13 ed. Royal Society of Chemistry, Vol. 2018-January. p. 1-120 120 p. (New Developments in NMR; vol. 2018-January, no. 13).

Research output: Chapter in Book/Report/Conference proceedingChapter

Contrast Media
Magnetic resonance
Coordination Complexes
Magnetic Resonance Imaging
Imaging techniques

Chemical Modulation of WNT Signaling in Cancer

Zhang, L. S. & Lum, L., Jan 1 2018, WNT Signaling in Health and Disease. Elsevier B.V., p. 245-269 25 p. (Progress in Molecular Biology and Translational Science; vol. 153).

Research output: Chapter in Book/Report/Conference proceedingChapter

Porcupines
Acyltransferases
Antineoplastic Agents
Regeneration
Melanoma

Commotio cordis: Pathophysiology, prevention, and treatment

Kumar, K. R., Mandleywala, S. N. & Link, M. S., Apr 20 2018, Exercise Risks, Cardiac Arrhythmias and Unusual Problems in Athletes. World Scientific Publishing Co. Pte Ltd, Vol. 3-3. p. 121-133 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Commotio Cordis

Complications with early onset scoliosis

Ramo, B. A. & Johnston, C. E., Jan 1 2018, Early Onset Scoliosis: A Clinical Casebook. Springer International Publishing, p. 245-270 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Scoliosis
Kyphosis
Ribs
Spine
Bone and Bones

Computed tomography

Goerne, H. & Rajiah, P., May 31 2018, Right Heart Pathology: From Mechanism to Management. Springer International Publishing, p. 601-612 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tomography
Ionizing Radiation
Contrast Media
Heart Diseases
Pathology

Current understanding of genetic factors in idiopathic scoliosis

Wise, C. A. & Ikegawa, S., Jun 12 2018, The Genetics and Development of Scoliosis: Second Edition. Springer International Publishing, p. 139-157 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Scoliosis

DdTRAP: A method for sensitive and precise quantification of telomerase activity

Ludlow, A. T., Shelton, D., Wright, W. E. & Shay, J. W., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 513-529 17 p. (Methods in Molecular Biology; vol. 1768).

Research output: Chapter in Book/Report/Conference proceedingChapter

Telomerase
Telomere
Neoplasms
Polymerase Chain Reaction
Chromosomes, Human, Pair 3

Developmental molecular biology of the pancreas

Murtaugh, L. C., Cleaver, O. & MacDonald, R. J., Apr 11 2018, Pancreatic Cancer. Springer New York, p. 89-145 57 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Developmental Biology
Molecular Biology
Pancreas
Intrinsic Factor
Organogenesis

Endocrine hypertension

White, P. C., Jan 1 2018, Pediatric Hypertension. Springer International Publishing, p. 517-537 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hypertension
Adrenal Glands
Adenoma
Adrenal Cortex Diseases
Hormones

Exercise physiology for the clinician

Sarma, S. & Levine, B. D., Apr 20 2018, Cardiac Adaptations and Environmental Stress During Exercise. World Scientific Publishing Co. Pte Ltd, Vol. 1-3. p. 23-62 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fractures of the pelvis and acetabulum

Au, B., Sanders, D. T. & Sagi, H. C., Jan 1 2018, Orthopaedic Knowledge Update 12. Wolters Kluwer Health, p. 437-450 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Acetabulum
Pelvis
Wounds and Injuries
Orthopedics

Generating protein-linked and protein-free mono-, oligo-, and poly(ADP-ribose) in vitro

Lin, K. Y., Huang, D. & Lee Kraus, W., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 91-108 18 p. (Methods in Molecular Biology; vol. 1813).

Research output: Chapter in Book/Report/Conference proceedingChapter

Poly Adenosine Diphosphate Ribose
Adenosine Diphosphate Ribose
Adenosine Diphosphate
Poly(ADP-ribose) Polymerases
ADP Ribose Transferases

Generation of ultra-small PLGA nanoparticles by sequential centrifugation

Wu, X., Zhou, J. & Patel, T. R., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 17-24 8 p. (Methods in Molecular Biology; vol. 1831).

Research output: Chapter in Book/Report/Conference proceedingChapter

Centrifugation
Nanoparticles
Convection
Polymers
Brain

Genome-wide identification of transcription factor-binding sites in quiescent adult neural stem cells

Mukherjee, S. & Hsieh, J., 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1686. p. 265-286 22 p. (Methods in Molecular Biology; vol. 1686).

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Code
Adult Stem Cells
Neural Stem Cells
Transcription Factors
Binding Sites

Glucose uptake in heterologous expression systems

Lee, E. E. & Wang, R. C., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1713. p. 57-67 11 p. (Methods in Molecular Biology; vol. 1713).

Research output: Chapter in Book/Report/Conference proceedingChapter

Glucose
Facilitative Glucose Transport Proteins
Western Blotting
Alleles
Mutation

Hemodynamic and electrocardiographic aspects of uncomplicated singleton pregnancy

Fu, Q., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 413-431 19 p. (Advances in Experimental Medicine and Biology; vol. 1065).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hemodynamics
Chemical activation
Pregnancy
Angiotensins
Neurology

High-throughput characterization of primary microRNA transcripts

Chang, T. C. & Mendell, J. T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 1-9 9 p. (Methods in Molecular Biology; vol. 1823).

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
RNA Sequence Analysis
Untranslated RNA
Polyadenylation
Publications

Identifying genomic sites of adp-ribosylation mediated by specific nuclear parp enzymes using Click-ChIP

Rogge, R. A., Gibson, B. A. & Kraus, W. L., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 371-387 17 p. (Methods in Molecular Biology; vol. 1813).

Research output: Chapter in Book/Report/Conference proceedingChapter

Poly(ADP-ribose) Polymerases
Adenosine Diphosphate Ribose
Chromatin
Enzymes
NAD

Laparoscopic exploration for free air

Tompeck, A. J. & Narayan, M., Jan 4 2018, Minimally Invasive Acute Care Surgery. Springer International Publishing, p. 7-13 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Air

Magnetic resonance imaging

Rajiah, P., May 31 2018, Right Heart Pathology: From Mechanism to Management. Springer International Publishing, p. 613-624 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Heart Ventricles
Magnetic Resonance Imaging
Pathology

Malignant Neoplasms of the Nasal Cavity, Paranasal Sinuses, and Nasopharynx

Bishop, J. A. & Thompson, L. D. R., Feb 1 2018, Head and Neck Pathology: A Volume in the Series: Foundations in Diagnostic Pathology. Elsevier, p. 51-100.e6

Research output: Chapter in Book/Report/Conference proceedingChapter

Nasopharynx
Paranasal Sinuses
Nasal Cavity
Neoplasms
1 Citations

Myosin light chain kinases

Kemp, B. E. & Stull, J. T., Jan 1 2018, Peptides and Protein Phosphorylation. CRC Press, p. 116-133 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Myosin-Light-Chain Kinase
Myosin Light Chains
Phosphorylation
Muscle
Myosins

Neurocritical Care

Phelan, H. A., Apr 3 2018, Surgical Critical Care and Emergency Surgery: Clinical Questions and Answers: Second Edition. Wiley-Blackwell, p. 189-198 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ventriculostomy
Steroids
Edema
Brain Neoplasms
Brain Injuries

Neurologic disorders of the foot and ankle

Wukich, D. K., Jan 1 2018, AAOS Comprehensive Orthopaedic Review 2. Wolters Kluwer Health, Vol. 1. p. 1531-1544 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Non-Neoplastic Lesions of the Nasal Cavity, Paranasal Sinuses, and Nasopharynx

McCuiston, A. & Bishop, J. A., Feb 1 2018, Head and Neck Pathology: A Volume in the Series: Foundations in Diagnostic Pathology. Elsevier, p. 1-21.e2

Research output: Chapter in Book/Report/Conference proceedingChapter

Nasopharynx
Paranasal Sinuses
Nasal Cavity

On Developing the Tools and Metrics for a Neurosurgical Quality Program

Weprin, B. E., Feb 28 2018, Quality and Safety in Neurosurgery. Elsevier Inc., p. 37-51 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Practice Guidelines
Patient Satisfaction
Delivery of Health Care
Safety
Pressure

Other Common Congenital Defects in Adults

Shafer, K. & Brickner, M. E., Jan 8 2018, Essential Echocardiography: A Companion to Braunwald's Heart Disease. Elsevier, p. 440-446.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Ebstein Anomaly
Transposition of Great Vessels
Patent Ductus Arteriosus
Tetralogy of Fallot
Heart Diseases

Oxygenation imaging by nuclear magnetic resonance methods

Zhou, H., Arias-Ramos, N., López-Larrubia, P., Mason, R. P., Cerdán, S. & Pacheco-Torres, J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1718. p. 297-313 17 p. (Methods in Molecular Biology; vol. 1718).

Research output: Chapter in Book/Report/Conference proceedingChapter

Magnetic Resonance Spectroscopy
Oxygen
Biological Phenomena
Energy Metabolism
Stroke

Pediatric and adolescent gynecology

Schlomer, B. J., Jan 1 2018, Handbook of Pediatric Urology, Third Edition. Wolters Kluwer Health, p. 269-276 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pediatric musculoskeletal infections, inflammatory disorders, and nonaccidental fractures

Sharkey, M. S. & Copley, L. A., Jan 1 2018, Orthopaedic Knowledge Update 12. Wolters Kluwer Health, p. 853-866 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pediatrics
Infection
Musculoskeletal System
Juvenile Arthritis
Child Abuse

Perioperative Management of Pulmonary Hypertension and Right Ventricular Failure During Noncardiac Surgery

Aguirre, M. A., Lynch, I. P. & Hardman, B., Dec 1 2018, Advances in Anesthesia. McLoughlin, T. M., Torsher, L. C., Salinas, F. V. & Dutton, R. P. (eds.). 1 ed. Academic Press Inc., p. 201-230 30 p. (Advances in Anesthesia; vol. 36, no. 1).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pulmonary Hypertension
1 Citations

Secondary forms of hypertension in children: Overview

Sharma, S., Meyers, K. E. & Vidi, S. R., Jan 1 2018, Pediatric Hypertension. Springer International Publishing, p. 431-449 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hypertension
Reading
Blood Pressure
Vital Signs
Costs and Cost Analysis

Sex-specific ventricular and vascular adaptations to exercise

Barnes, J. N. & Fu, Q., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 329-346 18 p. (Advances in Experimental Medicine and Biology; vol. 1065).

Research output: Chapter in Book/Report/Conference proceedingChapter

Blood Vessels
Muscle
Durability
Exercise
Oxygen

Sweating as a heat loss thermoeffector

Gagnon, D. & Crandall, C. G., Jan 1 2018, Handbook of Clinical Neurology. Elsevier B.V., p. 211-232 22 p. (Handbook of Clinical Neurology; vol. 156).

Research output: Chapter in Book/Report/Conference proceedingChapter

Sweating
Hot Temperature
Sweat
Thermoreceptors
Eccrine Glands

Targeting Tertiary Lymphoid Structures for Tumor Immunotherapy

Tang, H., Qiu, X., Timmerman, C. & Fu, Y. X., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 275-286 12 p. (Methods in Molecular Biology; vol. 1845).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunotherapy
Neoplasms
Lymphocytes
Tumor Microenvironment
Antigen Presentation
1 Citations

Tet-assisted bisulfite sequencing (TAB-seq)

Yu, M., Han, D., Hon, G. C. & He, C., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1708. p. 645-663 19 p. (Methods in Molecular Biology; vol. 1708).

Research output: Chapter in Book/Report/Conference proceedingChapter

5-Methylcytosine
Genome
Cytosine
DNA
Protein Transport